Visualization Using R

In the this chapter, we will demonstrate how to use the methylation information produced in Chapter 2 to produce figures that aids in our exploration of the methylation patterns in these two cell lines.

For reader who do not have an account on the ALPS server, please check if you have access to the R environment for statistical analysis in your computer or server. If not, please download and compile the software.

wget http://cran.csie.ntu.edu.tw/src/base/R-3/R-3.1.2.tar.gz
tar zxfv R-3.1.2.tar.gz
cd R-3.1.2
./configure
make

R is also available on many operating system, including Windows. Please visit its website at http://www.r-project.org/.