DNA Methylation Sequencing Analysis
  • Introduction
  • Data Preparation
    • Locate the MethPipe Files
    • Download Utilities
    • Download Annotations
    • Annotation File Preparation – Defining Genomic Regions
  • Analysis Work Flow
    • DNA Methylation at Genomic Bins
    • DNA Methylation at CpG Islands
    • DNA Methylation at TFBS
    • DNA Methylation at Various Genic Structure Regions
    • DNA Methylation at Repeat Elements
    • Add CpG Islands Co-localization Information to HMR BED Files
    • Similarity and Differences of HMRs and PMDs from H1 and IMR90
      • HMRs
      • PMDs
  • Visualization Using R
    • Install R Libraries
    • Execute the R Scripts
  • An introduction of UCSC Genome Browser
    • General Usage
    • The Compressed Binary Index Format
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An introduction of UCSC Genome Browser

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Last updated 5 years ago

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The UCSC Genome Browser () is developed and maintained by the Genome Bioinformatics Group, a cross-departmental team within the UC Santa Cruz Genomics Institute and the Center for Biomolecular Science and Engineering (CBSE) at the University of California Santa Cruz (UCSC).

The UCSC Genome Browser provides a graphical interface to examine various data types (such as sequences, features, annotations, comparative analysis, etc.) from many genomes, ranging from yeast to humans. The straight-forward access to the wealth of data available via the Genome Browser is fundamental to genomic research.

http://genome.ucsc.edu/