Differential transcript usage (DTU) analysis
We will perform DTU in the following directory
The proposed workflow is adapted from the a 2018 publication authored by Michael Love, et al. in F1000Res.
We will use the quantification data generated by Salmon to perform DTU detection by the statistical methods, DRIMSeq and DEXSeq. As proposed in the paper, we will also use stageR to further control the overall false discovery rate (OFDR) across genes and transcripts
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